Knuuttila, T & Loettgers, A 2025, The Combinatorial Possibilities of Synthetic Biology. in Modeling the Possible. Routledge.

Jaeger, J, Loettgers, A & DiFrisco, J 2025, Beyond networks: explaining dynamics in the natural and social sciences. in T Knuuttila & A Loettgers (eds), Modelling the Possible.

Knuuttila, T & Loettgers, A 2024, Synthetic Models in Biology. in T Knuuttila, N Carrillo & R Koskinen (eds), The Routledge Handbook of Philosophy of Scientific Modeling . Routledge, London, pp. 482-497.

Knuuttila, T & Loettgers, A 2020, Magnetized Memories: Analogies and Templates in Model Transfer. in S Holm & M Serban (eds), Philosophical Perspectives on the Engineering Approach in Biology: Living Machines?. Routledge, Abingdon, pp. 123-140. <https://www.taylorfrancis.com/chapters/edit/10.4324/9781351212243-9/magnetized-memories-tarja-knuuttila-andrea-loettgers>

Knuuttila, T & Loettgers, A 2018, Models as Experimental Objects: Mathematical and Synthetic Modeling in the Study of Genetic Circuits. in IF Peschard & BC van Fraassen (eds), The Experimental Side of Modeling. University of Minnesota Press, Minneapolis, Minnesota Studies in the Philosophy of Science, vol. 21.

Knuuttila, T & Loettgers, A 2017, Mathematization in Synthetic Biology: Analogies, Templates, and Fictions. in J Lenhard & M Carrier (eds), Mathematics as a Tool: tracing new roles of mathematics in the sciences. 1 edn, Springer International Publishing AG , Cham, Boston Studies in the Philosophy and History of Science, vol. 327, pp. 37-56. https://doi.org/10.1007/978-3-319-54469-4_3

Knuuttila, T & Loettgers, A 2016, Contrasting Cases: The Lotka-Volterra Model Three Times. in T Sauer & R Scholl (eds), The Philosophy of Historical Case Studies. Springer, pp. 151 - 178.

Knuuttila, T & Loettgers, A 2013, Synthetic biology as an engineering science? analogical reasoning, synthetic modelling, and integration. in H Andersen (ed.), New Challenges to Philosophy of Science. Springer, Dordrecht [u.a.], The Philosophy of Science in a European Perspective, vol. 4, pp. 163-177. https://doi.org/10.1007/978-94-007-5845-2_14

Knuuttila, T & Loettgers, A 2012, The Productive Tension: Mechanisms vs. Templates in Modeling the Phenomena. in P Humphreys & C Imbert (eds), Models, simulations, and representations. 1 edn, Routledge, New York [u.a.], Routledge studies in the philosophy of science, vol. 9, pp. 3-24. https://doi.org/10.4324/9780203808412